"Eriko Nango,Takashi Yamamoto,Takashi Kumasaka,Tadashi Eguchi","Structure of Thermus thermophilus Homoisocitrate Dehydrogenase in Complex with a Designed Inhibitor",,"J. Biochem.",,"Vol. 150","No. 6","pp. 607-614",2011,Dec.
"Takeshi Hoshino,Eriko Nango,Seiki Baba,Tadashi Eguchi,Takashi Kumasaka","Crystallization and Preliminary X-ray Analysis of Isopentenyl Diphosphate Isomerase from Methanocaldococcus jannaschii",,"Acta Cryst.",,"Vol. F67","No. 1","pp. 101-103",2011,Jan.
"R. Yazawa,J. Takakura,Tomoko Sakata,Ihsanawati,R. Yatsunami,T. Fukui,T. Kumasaka,Nobuo Tanaka,Satoshi Nakamura","A calcium-dependent xylan-binding domain of alkaline xylanase from alkaliphilic Bacillus sp. strain 41M-1",,"Biosci. Biotechnol. Biochem.",,"Vol. 75",,"pp. 379-381",2011,
"Eriko Nango,Takashi Yamamoto,Takashi Kumasaka,Tadashi Eguchi","Crystal Structure of 3-Isopropylmalate Dehydrogenase in Complex with NAD+ and a Designed Inhibitor",,"Bioorg. Med. Chem.",," 17"," 22"," 7789-7794",2009,Nov.
"Eriko Nango,Takashi Kumasaka,Toshifumi Hirayama,Nobuo Tanaka,Tadashi Eguchi","Structure of 2-Deoxy-scyllo-inosose Synthase, a Key Enzyme in the Biosynthesis of 2-Deoxystreptamine-containing Aminoglycoside Antibiotics, in Complex with a Mechanism-Based Inhibitor and NAD+",,"Proteins",,"Vol. 70","No. 2","pp. 517-527",2008,Feb.
"Kanamasa, S,Sumi, K.,Yamuki, N.,Kumasaka, T.,Miura, T.,Abe, F.,Kajiwara, S.","Cloning and functional characterization of the copper/zinc superoxide dismutase gene from the heavy-metal-tolerant yeast Cryptococcus liquefaciens strain N6",,"Mol. Genet. Genomics.",,,,"pp. online",2006,Dec.
"Iwasaki, T.,Kounosu, A.,Ohmori, D.,Kumasaka, T.","Crystallization and preliminary X-ray diffraction studies of a hyperthermophilic Rieske protein variant (SDX-triple) with an engineered rubredoxin-like mononuclear iron site",,"Acta Cryst. F",,"Vol. 62",,"pp. 993-995",2006,Oct.
"Iwasaki, T.,Kounosu, A.,Kolling, D.R.,Lhee, S.,Crofts, A.R.,Dikanov, S.A.,Uchiyama, T.,Kumasaka, T.,Ishikawa, H.,Kono, M.,Imai, T.,Urushiyama, A.","Resonance Raman characterization of archaeal and bacterial Rieske protein variants with modified hydrogen bond network around the [2Fe-2S] center.",,"Protein Sci.",,"Vol. 15",,"pp. 2019-2024",2006,Aug.
"Fibriansah, G.,Masuda, S.,Hirose, R.,Hamada, K.,Tanaka, N.,Nakamura, S.,Kumasaka, T.","Crystallization and preliminary crystallographic analysis of endo-1,3-β-glucanase from alkaliphilic Nocardiopsis sp. strain F96",,"Acta Cryst. F",,"Vol. 62",,"pp. 20-22",2006,Jan.
"Aik-Hong Teh,Makoto Kimura,Masaki Yamamoto,Nobuo Tanaka,Isamu Yamaguchi,Takashi Kumasaka","The 1.48 Å Resolution Crystal Structure of the Homotetrameric Cytidine Deaminase from Mouse",,"Biochemistry",,"Vol. 45",,"pp. 7825-7833",2006,
"Ueno, G.,Kanda, H.,Hirose, R.,Ida, K.,Kumasaka, T.,Yamamoto, M.","RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation.",,"J. Struct. Funct. Genomics",,"Vol. 7",,"pp. 15-22",2006,
"Matsui, T.,Hogetsu, K.,Usukura, J.,Sato, T.,Kumasaka, T.,Akao, Y.,Tanaka, N.","Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes",,"Genes Cells",,"Vol. 11",,"pp. 439-452",2006,
"Nakamura, K.,Someya, Y.,Kumasaka, T.,Ueno, G.,Yamamoto, M.,Sato, T.,Takeda, N.,Miyamura, T.,Tanaka, N.","A norovirus protease structure provides insights into active and substrate binding site integrity",,"J. Virol.",,"Vol. 79",,"pp. 13685-13693",2005,Nov.
"Ihsanawati,Takashi Kumasaka,Tomonori Kaneko,Chihiro Morokuma,Rie Yatsunami,Takao Sato,Satoshi Nakamura,Nobuo Tanaka","Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8",,"Proteins",,"Vol. 61",,"pp. 999-1009",2005,Oct.
"Ihsanawati,Takashi Kumasaka,Tomonori Kaneko,Chihiro Morokuma,Rie Yatsunami,Takao SATO,Satoshi Nakamura,Nobuo Tanaka","Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8",,"Proteins",,"Vol. 61",,"pp. 999-1009",2005,
"Eriko Nango,Takashi Kumasaka,Takao Sato,Nobuo Tanaka,Katsumi Kakinuma,Tadashi Eguchi","Crystallization and X-ray analysis of 2-deoxy-scyllo-inosose synthase, the key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics",,"Acta Cryst. F",,"Vol. 61",,"pp. 709-711",2005,
"Ueno, G.,Kanda, H.,Kumasaka, T.,Yamamoto, M.","Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8",,"J. Synchrotron Rad.",,"Vol. 12",,"pp. 380-384",2005,
"Saijo, S.,Sato, T.,Kumasaka, T.,Tanaka,N. Harata, K.,Odahara, T.","Crystallization and preliminary X-ray studies on the reaction center-light-harvesting 1 core complex from Rhodopseudomonas viridis",,"Acta Cryst. F",,"Vol. 61",,"pp. 83-86",2005,
"Kaneko, T.,Tanaka, N.,Kumasaka, T.","Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis",,"Protein Sci.",,"Vol. 14",,"pp. 558-565",2005,
"Hori, T.,Yokomizo, T.,Ago, H.,Sugahara, M.,Ueno, G.,Yamamoto, M.,Kumasaka, T.,Shimizu, T.,Miyano, M.","Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase catalytic mechanism and a possible SH3 binding loop",,"J. Biol. Chem.",,"Vol. 279",,"pp. 22615-22623",2004,
"Matsui, T.,Hogetsu, K.,Akao, Y.,Tanaka, M.,Sato, T.,Kumasaka, T.,Tanaka, N.","Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54",,"Acta Cryst. D",,"Vol. 60",,"pp. 156-159",2004,
"Uchiyama, T.,Kounosu, A.,Sato, T.,Tanaka, N.,Iwasaki, T.,Kumasaka, T.","Crystallization and preliminary X-ray diffraction studies of the hyperthermophilic archaeal sulredoxin having the unique Rieske [2Fe-2S] cluster environment",,"Acta Cryst. D",,"Vol. 60",,"pp. 1487-1489",2004,
"Matsui, T.,Kumasaka, T.,Endo, K.,Sato, T.,Nakamura, S.,Tanaka, N.","Crystallization and preliminary X-ray crystallographic analysis of chitinase F1 (ChiF1) from the alkaliphilic Nocardiopsis sp. strain F96",,"Acta Cryst. D",,"Vol. 60",,"pp. 2016-2018",2004,
"Ueno, G.,Hirose, R.,Ida, K.,Kumasaka, T.,Yamamoto, M.","Sample management system for a vast amount of frozen crystals at SPring-8",,"J. Appl. Cryst.",,"Vol. 37",,"pp. 867-873",2004,
"Inoue, T.,Irikura, D.,Okazaki, N.,Kinugasa, S.,Matsumura, H.,Uodome, N.,Yamamoto, M.,Kumasaka, T.,Miyano, M.,Kai, Y.,Urade, Y.","Mechanism of metal activation of human hematopoietic prostaglandin D synthase",,"Nat. Struct. Biol.",,"Vol. 10",,"pp. 291-296",2003,
"Imamura, H.,Fushinobu, S.,Yamamoto, M.,Kumasaka, T.,Jeon, B. S.,Wakagi, T.,Matsuzawa, H.","Crystal structures of 4-α-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor",,"J. Biol. Chem.",,"Vol. 278",,"pp. 19378-19386",2003,
"Ihsanawati,Kumasaka, T.,Kaneko, T.,Morokuma, C.,Nakamura, S.,Tanaka, N.","Crystallization and preliminary X-ray studies of xylanase 10B from Thermotoga maritima",,"Acta Cryst. D",,"Vol. 59",,"pp. 1659-1661",2003,
"Kaneko, T.,Kumasaka, T.,Ganbe, T.,Sato, T.,Miyazawa, K.,Kitamura, N.,Tanaka, N.","Structural insight into modest binding of a non-PXXP ligand to the signal transducing adaptor molecule-2 Src homology 3 domain",,"J. Biol. Chem.",,"Vol. 278","No. 48","pp. 48162-48168",2003,
"Irikura, D.,Kumasaka, T.,Yamamoto, M.,Ago, H.,Miyano, M.,Kubota, K. B.,Sakai, H.,Hayaishi, O.,Urade, Y.","Cloning, Expression, Crystallization, and Preliminary X-Ray Analysis of Recombinant Mouse Lipocalin-type Prostaglandin D Synthase, a Somnogen-Producing Enzyme",,"J. Biochem.",,"Vol. 133",,"pp. 29-32",2003,
"熊坂崇,山本雅貴","MAD法による構造解析の進展",,"日本結晶学会誌",,"Vol. 45","No. 1","pp. 14-18",2003,
"堀哲哉,熊坂崇,山本雅貴,宮野雅司","ロドプシンの構造決定がひらくゲノム創薬の新しい道",,"バイオベンチャー",,"Vol. 2",,"pp. 73-79",2002,
"Tahirov, T.H.,Sato, K.,Ichikawa-Iwata, E.,Sasaki, M.,Inoue-Bungo, T.,Shiina, M.,Kimura, K.,Takata, S.,Fujikawa, A.,Morii, H.,Kumasaka, T.,Yamamoto, M.,Ishii, S.,Ogata, K.","Mechanism of c-Myb-C/EBPβ Cooperation from Separated Sites on a Promoter",,"Cell",,"Vol. 108",,"pp. 57-70",2002,
"Kimura, M.,Furuichi, M.,Yamamoto, M.,Kumasaka, T.,Mizuno, H.,Miyano, M.,Yamaguchi, I.","The Flexible C-Terminal Region of Aspergillus terreus Blasticidin S Deaminase: Identification of Its Functional Roles with Deletion Enzymes",,"Biochem. Biophys. Res. Commun.",,"Vol. 290",,"pp. 421-426",2002,
"Ida, K.,Norioka, S.,Yamamoto, M.,Kumasaka, T.,Yamashita, E.,Newbigin, E.,Clarke, A.E.,Sakiyama, F.,Sato, M.","The 1.55 Å resolution structure of Nicotiana alata SF11-RNase associated with gametophytic self-incompatibility",,"J. Mol. Biol.",,"Vol. 314",,"pp. 103-112",2002,
"Kumasaka, T.,Yamamoto, M.,Yamashita, E.,Moriyama, H.,Ueki, T.","Trichromatic Concept Optimizes MAD Experiments in Synchrotron X-ray Crystallography",,"Structure",,"Vol. 10",,"pp. 1205-1210",2002,
"Tahirov, T.H.,Inoue-Bungo, T.,Morii, H.,Fujikawa, A.,Sasaki, M.,Kimura, K.,Shiina, M.,Sato, K.,Kumasaka, T.,Yamamoto, M.,Ishii, S.,Ogata, K.","Structural Analyses of DNA Recognition by the AML1/Runx-1 Runt Domain and Its Allosteric Control by CBFβ",,"Cell",,"Vol. 104",,"pp. 755-767",2001,
"山本雅貴,熊坂崇","トリクロマティックコンセプトによるタンパク質の迅速構造解析",,"生物物理",,"Vol. 41",,"pp. 156-159",2001,
"Hori, T.,Kumasaka, T.,Yamamoto, M.,Nonaka, T.,Tanaka, N.,Hashimoto, Y.,Ueki, T.,Takio, K.","Structure of a new `aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms",,"Acta Cryst. D",,"Vol. 57",,"pp. 361-368",2001,
"Yamamoto, M,Kumasaka, T.,Yamazaki, H.,Sasaki, K.,Yokozawa, Y.,Ishikawa, T.","Development of high-speed Imaging Plate detector",,"Nucl. Instrum. Meth. A",,"Vol. 467-468",,"pp. 1160-1162",2001,
"Tahirov, T.H.,Inoue-Bungo, T.,Sasaki, M.,Shiina, M.,Kimura, K.,Sato, K.,Kumasaka, T.,Yamamoto, M.,Kamiya, N.,Ogata, K.","Crystallization and preliminary X-ray analyses of quaternary, ternary and binary protein-DNA complexes with involvement of AML1/Runx-1/CBFα Runt domain, CBFβ and the C/EBPβ bZip region",,"Acta Cryst. D",,"Vol. 57",,"pp. 850-853",2001,
"Samatey, F.A.,Imada, K.,Nagashima, S.,Vonderviszt, F.,Kumasaka, T.,Yamamoto, M.,Namba, K.","Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling",,"Nature",,"Vol. 410",,"pp. 331-337",2001,
"宮野雅司,熊坂崇,堀哲哉,山本雅貴","７回膜貫通型レセプター・ロドプシンの結晶構造",,"蛋白質核酸酵素",,"Vol. 46",,"pp. 687-697",2001,
"Yamamoto, M.,Kumasaka, T.,Yamashita, E.,Moriyama,H. Sato, M.,Ueki, T.","Prospects for X-ray Crystal Structure Analysis of Selenoproteins with SPring-8 Synchrotron Radiation",,"J. Health Sci.",,"Vol. 46",,"pp. 426-429",2000,
"Palczewski, K.,Kumasaka, T.,Hori, T.,Behnke, C. A.,Motoshima, H.,Fox, B. A.,Le Trong, I.,Teller, D. C.,Okada, T.,Stenkamp, R. E.,Yamamoto, M.,Miyano","Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor",,"Science",,"Vol. 289",,"pp. 739-745",2000,
"Nakai, T.,Hasegawa, T.,Yamashita, E.,Yamamoto, M.,Kumasaka, T.,Ueki, T.,Nanba, H.,Ikenaka, Y.,Takahashi, S.,Sato, M.,Tsukihara, T.","Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases",,"Structure",,"Vol. 8",,"pp. 729-739",2000,
"Mitsuhashi, S.,Mizushima, T.,Yamashita, E.,Yamamoto, M.,Kumasaka, T.,Moriyama, H.,Ueki, T.,Miyachi, S.,Tsukihara, T.","X-ray Structure of β-Carbonic Anhydrase from the Red Alga, Porphyridium purpureum, Reveals a Novel Catalytic Site for CO2 Hydration",,"J. Biol. Chem.",,"Vol. 275",,"pp. 5521-5526",2000,
"Sugahara, M.,Mikawa, T.,Kato, R.,Fukuyama, K.,Kumasaka, T.,Yamamoto, M.,Inoue, Y.,Kuramitsu, S.","Crystallization and Preliminary X-Ray Crystallographic Studies of Thermus thermophilus HB8 MutM Protein Involved in Repairs of Oxidative DNA Damage",,"J. Biochem.",,"Vol. 127",,"pp. 9-11",2000,
"Fujisawa, T.,Inoue, K.,Oka, T.,Iwamoto, T.,Uruga, T.,Kumasaka, T.,Inoko, Y.,Yagi, N.,Yamamoto, M.,Ueki, T.","Small-Angle X-ray Scattering Station at the SPring-8 RIKEN beamline",,"J. Appl. Cryst.",,"Vol. 33",,"pp. 797-800",2000,
"山本雅貴,熊坂崇,石川哲也","SPring-8のダイヤモンド分光器",,"高圧力の科学と技術",,"Vol. 10",,"pp. 56-61",2000,
"山本雅貴,熊坂崇,石川哲也","ダイヤモンド分光器",,"ニューダイヤモンド",,"Vol. 58",,"pp. 16-20",2000,
"Sugahara, M.,Mikawa, T.,Kumasaka, T.,Yamamoto, M.,Kato, R.,Fukuyama, K.,Inoue, Y.,Kuramitsu S.","Crystal structure of a Repair Enzyme of Oxidatively-Damaged-DNA, MutM (Fpg), from an Extreme Thermophile, Thermus thermophilus HB8",,"EMBO J.",,"Vol. 19",,"pp. 3857-3869",2000,
"熊坂崇","タンパク質構造解析のためのソフトウェア紹介",,"日本結晶学会誌",,"Vol. 42",,"pp. 474-477",2000,
"Toyoda, T.,Tin, O.F.,Ito, K.,Fujiwara, T.,Kumasaka, T.,Yamamoto, M.,Garber, M.B.,Nakamura, Y.","Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch",,"RNA",,"Vol. 6",,"pp. 1432-1444",2000,
"Kunishima, N.,Shimada, Y.,Tsuji, Y.,Sato, T.,Yamamoto, M.,Kumasaka, T.,Nakanishi, S.,Jingami, H.,Morikawa, K.","Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor",,"Nature",,"Vol. 407",,"pp. 971-977",2000,
"Lee, S. J.,Imamoto, N.,Sakai, H.,Nakagawa, A.,Kose, S.,Koike, M,Yamamoto, M.,Kumasaka, T.,Yoneda, Y.,Tsukihara, T.","The Adoption of a Twisted Structure of Importin-β is Essential for the Protein-protein Interaction Required for Nuclear Transport",,"J. Mol. Biol.",,"Vol. 302",,"pp. 251-264",2000,
"Motoshima, H.,Inagaki, K.,Kumasaka, T.,Furuichi, M.,Inoue, H.,Tamura, T.,Esaki, N.,Soda, K.,Tanaka, N.,Yamamoto, M.,Tanaka, H.","Crystal Structure of the Pyridoxal-5'-phosphate Dependent L-Methionine γ-Lyase from Pseudomonas putida",,"J. Biochem.",,"Vol. 128",,"pp. 349-354",2000,
"Suzuki, M.,Yamamoto, M.,Kumasaka, T.,Sato, K.,Toyokawa, H.,Aries, I. F.,Jerram, P. A.,Gullick, D.,Ueki, T.","A Multiple CCD X-ray Detector and its Basic Characterization",,"J. Synchrotron Rad.",,"Vol. 6",,"pp. 6-18",1999,
"Suzuki, M.,Yamamoto, M.,Kumasaka, T.,Sato, K.,Toyakawa, H.,Ueki, T.","Performance of Multiple-CCD X-ray Detector System at SPring-8 for Protein Crystallography",,"Proc. SPIE",,"Vol. 3774",,"pp. 38-45",1999,
"Suzuki, M.,Yamamoto, M.,Kumasaka, T.,Sato, K.,Toyokawa, H.,Aries, I. F.,Jerram, P. A.,Gullick, D.,Ueki, T.","A Multiple CCD X-ray Detector and its first operation with synchrotron radiation X-ray beam",,"Nucl. Instrum. Meth. A",,"Vol. 436",,"pp. 174-181",1999,
"山本雅貴,熊坂崇,植木龍夫","３波長結晶構造解析ビームライン",,"放射光",,"Vol. 11",,"pp. 107-113",1998,
"Yamamoto, M.,Kumasaka, T.,Yamashita, E.","STUDIES ON THE MAD METHOD AT THE RIKEN BEAMLINE I BL45XU",,"SPring-8 Research Frontiers",,"Vol. 1997-1998",,"pp. 6-8",1998,
"Yamamoto, M.,Kumasaka, T.,Fujisawa, T.,Ueki, T.","Trichromatic concept at SPring-8 RIKEN beamline I",,"J. Synchrotron Rad.",,"Vol. 5",,"pp. 222-226",1998,
"Yamamoto, M.,Kumasaka, T.,Uruga, T.,Kamiya, N.,Iwasaki, H.,Ueki, T.","Evalutation of high spatial resolution imaging plate",,"Nucl. Instrum. Meth. A",,"Vol. 416",,"pp. 314-318",1998,
"Kumasaka, T.,Yamamoto, M.,Moriyama, H.,Tanaka, N.,Sato, M.,Katsube, Y.,Yamakawa, Y.,Omori-Satoh, T.,Iwanaga, S.,Ueki, T.","Crystal Structure of H2-proteinase from the Venom of Trimeresurus flavoviridis",,"J. Biochem.",,"Vol. 119",,"pp. 49-57",1996,
"熊坂崇","Crystal Structure of H2-Proteinase from Habu Venom",,,,,,,1996,
"Kumasaka, T.,Takeya, H.,Yamamoto, M.,Yamakawa, Y.,Omori-Satoh, T.,Moriyama, H.,Tanaka, N.,Sato, M.,Katsube, Y.,Iwanaga, S.","Crystallization and Preliminary X-Ray Study of H2-proteinase from the Venom of Trimeresurus flavoviridis",,"J. Biochem.",,"Vol. 117",,"pp. 929-930",1995,