@book{CTT100575866,
  author = {Takafumi Kanamori and Hidetoshi Shimodaira},
  title = {Geometry of covariate shift with applications to active learning},
  publisher = {MIT Press},
  year = 2009,
}

@book{CTT100566602,
  author = {下平英寿},
  title = {第８章 ブートストラップ},
  publisher = {東京大学出版会},
  year = 2008,
}

@book{CTT100566601,
  author = {下平英寿},
  title = {第4章 モデル選択とブートストラップ},
  publisher = {共立出版},
  year = 2007,
}

@book{CTT100576228,
  author = {赤池弘次 and 甘利俊一 and 北川源四郎 and 樺島祥介 and 下平英寿 and 室田一雄 and 土谷隆},
  title = {赤池情報量規準AIC −モデリング・予測・知識発見−},
  publisher = {共立出版},
  year = 2007,
}

@book{CTT100388644,
  author = {下平英寿},
  title = {情報量規準によるモデル選択とその信頼性評価},
  publisher = {モデル選択 ─ 予測・検定・推定の交差点, 統計科学のフロンティア 3 岩波書店},
  year = 2004,
}

@book{CTT100470919,
  author = {H. Shimodaira},
  title = {A new criterion for selecting models from partially observed data},
  publisher = {Lecture Notes in Statistics, Springer-Verlag},
  year = 1994,
}

@article{CTT100615127,
  author = {Hidetoshi Shimodaira},
  title = {Frequentist and Bayesian measures of confidence via multiscale bootstrap for testing three regions},
  journal = {Annals of the Institute of Statistical Mathematics},
  year = 2010,
}

@article{CTT100615126,
  author = {下平英寿},
  title = {滑らかでない境界をもつ領域のためのマルチスケール・ブートストラップ法の理論と実装},
  journal = {統計数理},
  year = 2008,
}

@article{CTT100550583,
  author = {Hidetoshi Shimodaira},
  title = {Testing Regions with Nonsmooth Boundaries via Multiscale Bootstrap},
  journal = {Journal of Statistical Planning and Inference},
  year = 2008,
}

@article{CTT100550582,
  author = {T. Nagashima and Hidetoshi Shimodaira and K. Ide and T. Nakakuki and Y. Tani and K. Takahashi and N. Yumoto and M. Hatakeyama},
  title = {Quantitative transcriptional control of ERBB receptor signaling undergoes graded to biphasic response for cell differentiation},
  journal = {Journal of Biological Chemistry},
  year = 2007,
}

@article{CTT100525336,
  author = {Ryota Suzuki and Hidetoshi Shimodaira},
  title = {pvclust: an R package for assessing the uncertainty in hierarchical clustering},
  journal = {Bioinformatics},
  year = 2006,
}

@article{CTT100388645,
  author = {H. Shimodaira},
  title = {Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling},
  journal = {Annals of Statistics},
  year = 2004,
}

@article{CTT100388643,
  author = {Y. Yamamoto and H. Nakada and H. Shimodaira and S. Matsuoka},
  title = {Parallelization of phylogenetic tree inference using Grid technologies},
  journal = {Proceedings of the First International Workshop on Life Science Grid (LSGRID 2004)},
  year = 2004,
}

@article{CTT100546919,
  author = {Masashi Tanaka and Vicente M. Cabrera and Ana M. Gonz?lez and Jos? M. Larruga and Takeshi Takeyasu1 and Noriyuki Fuku and Li-Jun Guo and Raita Hirose and Yasunori Fujita and Miyuki Kurata and Ken-ichi Shinoda and Kazuo Umetsu and Yoshiji Yamada and Yoshiharu Oshida and Yuzo Sato and Nobutaka Hattori and Yoshikuni Mizuno and Yasumichi Arai and Nobuyoshi Hirose and Shigeo Ohta and Osamu Ogawa and Yasushi Tanaka and Ryuzo Kawamori and Masayo Shamoto-Nagai and Wakako Maruyama and Hiroshi Shimokata and Ryota Suzuki and Hidetoshi Shimodaira},
  title = {Mitochondrial Genome Variation in Eastern Asia and the Peopling of Japan},
  journal = {Genome Research},
  year = 2004,
}

@article{CTT100388641,
  author = {T. Kamimura and H. Shimodaira and S. Imoto and S. Kim and K. Tashiro and S. Kuhara and S. Miyano},
  title = {Multiscale Bootstrap Analysis of Gene Networks Based on Bayesian Networks and Nonparametric Regression},
  journal = {Genome Informatics},
  year = 2003,
}

@article{CTT100388642,
  author = {T. Kanamori and H. Shimodaira},
  title = {Active learning algorithm using the maximum weighted log-likelihood estimator},
  journal = {Journal of Statistical Planning and Inference},
  year = 2003,
}

@article{CTT100471247,
  author = {下平英寿},
  title = {ブートストラップ法によるクラスタ分析のバラツキ評価},
  journal = {統計数理},
  year = 2002,
}

@article{CTT100471246,
  author = {H. Shimodaira},
  title = {Approximately unbiased test of phylogenetic tree selection},
  journal = {Systematic Biology},
  year = 2002,
}

@article{CTT100471245,
  author = {S. Kuriki and H. Shimodaira and T. Hayter},
  title = {On the isotonic range statistic for testing against an ordered alternative},
  journal = {Journal of Statistical Planning and Inference},
  year = 2002,
}

@article{CTT100486908,
  author = {S.Imoto and S.Kim and H.Shimodaira and S.Aburatani and K.Tashiro and S.Kuhara and S.Miyano},
  title = {Bootstrap Analysis of Gene Networks Based on Byesian Networks and Nonparametric Regression},
  journal = {Genome Informatics},
  year = 2002,
}

@article{CTT100486907,
  author = {下平英寿},
  title = {データからの「発見」と新しいブートストラップ法},
  journal = {数理科学},
  year = 2002,
}

@article{CTT100471242,
  author = {T. Buckley and C. Simon and H. Shimodaira and G. Chambers},
  title = {Evaluating hypotheses on the origin and evolution of the New Zealand alpine cicadas (Maoricicada) using multiple-comparison tests of tree topology},
  journal = {Molecular Biology and Evolution},
  year = 2001,
}

@article{CTT100471243,
  author = {H. Shimodaira},
  title = {Multiple comparisons of log-likelihoods and combining nonnested models with applications to phylogenetic tree selection},
  journal = {Communications in Statistics, Part A-Theory and Methods},
  year = 2001,
}

@article{CTT100471244,
  author = {H. Shimodaira and M. Hasegawa},
  title = {CONSEL: for assessing the confidence of phylogenetic tree selection, Bioinformatics},
  journal = {Bioinformatics},
  year = 2001,
}

@article{CTT100471238,
  author = {金森敬文 and 下平英寿},
  title = {重み付き最尤推定量の情報量規準を用いた能動学習の最適化},
  journal = {統計数理},
  year = 2000,
}

@article{CTT100471237,
  author = {H. Shimodaira},
  title = {Improving predictive inference under covariate shift by weighting the log-likelihood function},
  journal = {Journal of Statistical Planning and Inference},
  year = 2000,
}

@article{CTT100471241,
  author = {R. Ota and P. Waddell and M. Hasegawa and H. Shimodaira and H. Kishino},
  title = {Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters},
  journal = {Molecular Biology and Evolution},
  year = 2000,
}

@article{CTT100471239,
  author = {下平英寿},
  title = {ゲノムの統計解析（５）モデル選択のバラツキを評価する},
  journal = {ESTRELA},
  year = 2000,
}

@article{CTT100471234,
  author = {下平英寿},
  title = {モデル選択理論の新展開},
  journal = {統計数理},
  year = 1999,
}

@article{CTT100470922,
  author = {H. Shimodaira and M. Hasegawa},
  title = {Multiple comparisons of log-likelihoods with applications to phylogenetic inference},
  journal = {Molecular Biology and Evolution},
  year = 1999,
}

@article{CTT100471236,
  author = {下平英寿},
  title = {信頼集合と予測分布地図による統計的モデル選択の診断法},
  journal = {計測と制御},
  year = 1999,
}

@article{CTT100471235,
  author = {下平英寿},
  title = {統計的仮説検定は有効か？},
  journal = {日本統計学会会報},
  year = 1999,
}

@article{CTT100470921,
  author = {H. Shimodaira},
  title = {An application of multiple comparison techniques to model selection},
  journal = {Annals of the Institute of Statistical Mathematics},
  year = 1998,
}

@article{CTT100470920,
  author = {H. Shimodaira},
  title = {Assessing the error probability of the model selection test,},
  journal = {Annals of the Institute of Statistical Mathematics},
  year = 1997,
}

@article{CTT100470918,
  author = {下平英寿},
  title = {モデルの信頼集合と地図によるモデル探索},
  journal = {統計数理},
  year = 1993,
}

@inproceedings{CTT100654956,
  author = {金城 憲長 and 山下 真 and 福田 光浩 and 下平 英寿},
  title = {センサーネットワークモデルにおける重み付けによる数値精度向上について},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100615124,
  author = {下平英寿},
  title = {多数の片側検定に関するFalse Discovery Rateのマルチスケール計算},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100615125,
  author = {青木正良 and 金森敬文 and 下平英寿},
  title = {マルチスケール・バギングによる判別分析の信頼性評価},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100615123,
  author = {小松勇介 and 清水昌平 and 下平英寿},
  title = {マルチスケール・ブートストラップを用いた信頼度計算： LiNGAMによる因果モデル探索の場合},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100575870,
  author = {下平英寿},
  title = {マルチスケール・ブートストラップ法による頻度論的およびベイズ的な信頼度計算と*FDR},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575869,
  author = {下平英寿},
  title = {Ｒを用いたブートストラップ法の大規模並列計算},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575868,
  author = {下平英寿},
  title = {マルチスケール・ブートストラップ法による頻度論的およびベイズ的な信頼度計算},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575942,
  author = {Paul Sheridan and Takeshi Kamimura and Hidetoshi Shimodaira},
  title = {Scale-free prior specification in graphical modeling with applications to gene network inference},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575867,
  author = {Hidetoshi Shimodaira},
  title = {Identification of phylogenetic networks under model misspecification},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575943,
  author = {Paul Sheridan and Takeshi Kamimura and Hidetoshi Shimodaira},
  title = {Scale-free prior specification in graphical modeling with applications to bioinformatics},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100575944,
  author = {Paul Sheridan and Takeshi Kamimura and Hidetoshi Shimodaira},
  title = {Scale-free prior specification in graphical modeling with applications to bioinformatics},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100575946,
  author = {Paul Sheridan and Hidetoshi Shimodaira},
  title = {Scale-free network priors in Bayesian inference with applications to Bioinformatics},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100575945,
  author = {Paul Sheridan and Takeshi Kamimura and Hidetoshi Shimodaira},
  title = {Scale-free prior specification in graphical modeling with applications to gene networks},
  booktitle = {},
  year = 2007,
}

@misc{CTT100546920,
  author = {H. Simodaira and M. Hasegawa},
  title = {Assessing the uncertainty in phylogenetic inference},
  year = 2005,
}

@misc{CTT100806131,
  author = {中田 和秀 and 下平 英寿 and 武田 朗子 and 小林 和博},
  title = {第１５回RAMPシンポジウムルポ},
  year = 2004,
}

@misc{CTT100595092,
  author = {Hidetoshi Shimodaira},
  title = {統計的モデル選択の研究　-　モデルの信頼集合の構成},
  year = 1995,
}

@misc{CTT100594265,
  author = {Hidetoshi Shimodaira},
  title = {確率モデルに基づく認識と学習　-　双対座標を用いた幾何学的アプローチ},
  year = 1992,
}



@phdthesis{CTT100595092,
  author = {Hidetoshi Shimodaira},
  title = {統計的モデル選択の研究　-　モデルの信頼集合の構成},
  school = {東京大学},
  year = 1995,
}

@mastersthesis{CTT100594265,
  author = {Hidetoshi Shimodaira},
  title = {確率モデルに基づく認識と学習　-　双対座標を用いた幾何学的アプローチ},
  school = {東京大学},
  year = 1992,
}